I recently wanted to do some computer vision stuff using OpenFace, which is a collection of face-processing computer vision algorithms and tools to use them. It uses OpenCV 3.0.something, which uses, among other things, vtk6, and friends libvtk6-dev and python-vtk6.
Normally, this wouldn’t be a problem, but I use ROS Indigo, as does the lab I work in. ROS Indigo uses some previous version of vtk, and so attempting to install OpenCV 3.0 blows away my ROS install, and makes apt freak out when I try to install it again. The actual error was something like “you have broken held packages”, only I didn’t actually have held packages OR broken packages.
Apt just gives up at this point. Aptitude, on the other hand, proposes removing the offending VTK packages and proceeding with the ROS install. Only time will tell if I’ve trashed my OpenCV install, but if I have, I can just go back to an older OpenCV version.